python中mpi4py的所有基础使用案例详解
python中mpi4py的基础使用
大多数 MPI 程序都可以使用命令 mpiexec 运行。在实践中，运行 Python 程序如下所示：
$ mpiexec -n 4 python script.py
案例1：测试comm.send 和comm.recv函数，代码如下
from mpi4py import MPI
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
if rank == 0:
data = {'a': 7, 'b': 3.14}
comm.send(data, dest=1, tag=11)
elif rank == 1:
data = comm.recv(source=0, tag=11)
rank代表进程编号，其总数是mpiexec -n中的n的个数，最大的n受到电脑cpu内核数的限制
dest代表发送的目标，tag是一个标志位可以忽略，source为数据来源rank标志
案例2：具有非阻塞通讯的python对象
from mpi4py import MPI
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
if rank == 0:
data = {'a': 7, 'b': 3.14}
req = comm.isend(data, dest=1, tag=11)
req.wait()
elif rank == 1:
req = comm.irecv(source=0, tag=11)
data = req.wait()
案例3： 快速发送实例
这里的Send和Recv都是大写，用于numpy数据的传输
from mpi4py import MPI
import numpy
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
# passing MPI datatypes explicitly
if rank == 0:
data = numpy.arange(1000, dtype='i')
comm.Send([data, MPI.INT], dest=1, tag=77)
elif rank == 1:
data = numpy.empty(1000, dtype='i')
comm.Recv([data, MPI.INT], source=0, tag=77)
# automatic MPI datatype discovery
if rank == 0:
data = numpy.arange(100, dtype=numpy.float64)
comm.Send(data, dest=1, tag=13)
elif rank == 1:
data = numpy.empty(100, dtype=numpy.float64)
comm.Recv(data, source=0, tag=13)
案例4：集体通讯，广播机制
广播机制就是将当前root=0端口下的所有信息发送到任何一个进程
from mpi4py import MPI
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
if rank == 0:
data = {'key1' : [7, 2.72, 2+3j],
'key2' : ( 'abc', 'xyz')}
else:
data = None
data = comm.bcast(data, root=0)
案例5：scatter，将root=0下的数据一次分发到各个rank下
from mpi4py import MPI
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
if rank == 0:
data = [(i+1)**2 for i in range(size)]
else:
data = None
data = comm.scatter(data, root=0)
assert data == (rank+1)**2
案例6：gather，将所有rank下的数据收集到root下
from mpi4py import MPI
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
data = (rank+1)**2
data = comm.gather(data, root=0)
if rank == 0:
for i in range(size):
assert data[i] == (i+1)**2
else:
assert data is None
案例7，numpy的广播机制
与之前一样都是大写
from mpi4py import MPI
import numpy as np
comm = MPI.COMM_WORLD
rank = comm.Get_rank()
if rank == 0:
data = np.arange(100, dtype='i')
else:
data = np.empty(100, dtype='i')
comm.Bcast(data, root=0)
for i in range(100):
assert data[i] == i
案例8：numpy的Scatter机制
from mpi4py import MPI
import numpy as np
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
sendbuf = None
if rank == 0:
sendbuf = np.empty([size, 100], dtype='i')
sendbuf.T[:,:] = range(size)
recvbuf = np.empty(100, dtype='i')
comm.Scatter(sendbuf, recvbuf, root=0)
assert np.allclose(recvbuf, rank)
案例9：numpy的Gather机制
from mpi4py import MPI
import numpy as np
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
sendbuf = np.zeros(100, dtype='i') + rank
recvbuf = None
if rank == 0:
recvbuf = np.empty([size, 100], dtype='i')
comm.Gather(sendbuf, recvbuf, root=0)
if rank == 0:
for i in range(size):
assert np.allclose(recvbuf[i,:], i)
案例10 ：allgather机制
allgather就是 scatter 加上广播机制。
rank0 = a
rank1 = b
rank2 = c
allgather后结果为
rank0 = a，b，c
rank1 = a，b，c
rank2 = a，b，c
from mpi4py import MPI
import numpy
def matvec(comm, A, x):
m = A.shape[0] # local rows
p = comm.Get_size()
xg = numpy.zeros(m*p, dtype='d')
comm.Allgather([x, MPI.DOUBLE],
[xg, MPI.DOUBLE])
y = numpy.dot(A, xg)
return y
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